All modules for which code is available

• rna_tools.BlastPDB
• rna_tools.RfamSearch
• rna_tools.SecondaryStructure
• rna_tools.Seq
• rna_tools.rna_tools_lib
• rna_tools.tools.clanstix.rna_clanstix
• rna_tools.tools.clarna_app.rna_clarna_app
• rna_tools.tools.cluster_load.cluster_load
• rna_tools.tools.extra_functions.select_fragment
• rna_tools.tools.misc.rna_add_chain
• rna_tools.tools.mq.AnalyzeGeometry.AnalyzeGeometry
• rna_tools.tools.mq.ClashScore.ClashScore
• rna_tools.tools.mq.Dfire.Dfire
• rna_tools.tools.mq.FARNA.FARNA
• rna_tools.tools.mq.RASP.RASP
• rna_tools.tools.mq.RNA3DCNN.RNA3DCNN
• rna_tools.tools.mq.RNAkb.RNAkb
• rna_tools.tools.mq.RNAscore.RNAscore
• rna_tools.tools.mq.eSCORE.eSCORE
• rna_tools.tools.pdbs_measure_atom_dists.pdbs_measure_atom_dists
• rna_tools.tools.pymol_drawing.pymol_drawing
• rna_tools.tools.renum_pdb_to_aln.renum_pdb_to_aln
• rna_tools.tools.rna_alignment.random_assignment_of_nucleotides
• rna_tools.tools.rna_alignment.rna_alignment
• rna_tools.tools.rna_calc_inf.rna_calc_inf
• rna_tools.tools.rna_calc_rmsd.rna_calc_rmsd
• rna_tools.tools.rna_calc_rmsd.rna_calc_rmsd_all_vs_all
• rna_tools.tools.rna_convert_pseudoknot_formats.rna_ss_pk_to_simrna
• rna_tools.tools.rna_pdb_edit_occupancy_bfactor.rna_pdb_edit_occupancy_bfactor
• rna_tools.tools.rna_rosetta.rna_rosetta_check_progress
• rna_tools.tools.rna_rosetta.rna_rosetta_cluster
• rna_tools.tools.rna_rosetta.rna_rosetta_extract_lowscore_decoys
• rna_tools.tools.rna_rosetta.rna_rosetta_head
• rna_tools.tools.rna_rosetta.rna_rosetta_min
• rna_tools.tools.rna_rosetta.rna_rosetta_n
• rna_tools.tools.rna_rosetta.rna_rosetta_run
• rna_tools.tools.rna_sali2dotbracket.rna_sali2dotbracket
• rna_tools.tools.rna_x3dna.rna_x3dna
• rna_tools.tools.simrna_trajectory.simrna_trajectory