Install & Configure¶
Download rna-pdb-tools by clicking here https://github.com/mmagnus/rna-pdb-tools/archive/master.zip or using
$ git clone https://github.com/mmagnus/rna-pdb-tools.git $ cd rna-pdb-tools
git is better if you want to contribute to the package and if you want to get pretty frequent updates).
The first step is “zero” because not all requirments are needed to start working with rna-pdb-tools.
To install the full set of requirements, use
pip install -r docs/requirements.txt
and install the package itself in three steps:
add the path to the package to your PYTHONPATH (in ~/.bashrc), e.g.
add the path to the bin folder of the package to your PATH (in ~/.bashrc), e.g.
and run the install script:
➜ rna-pdb-tools git:(master) ✗ ./install_links_bin.sh Installed in ./bin rmsd_calc_to_target.py
should be OK now :-)
To set you own configuration, please first:
cp rpt_config_local.py_sample rpt_config_local.py # in rna-pdb-tools/rna_pdb_tools
and then edit
rpt_config_local.py as you need. In my case it is:
rna_pdb_tools git:(master) ✗ cat rpt_config_local.py VARNA_PATH = '/Users/magnus/skills/rnax/varna_tut/' VARNA_JAR_NAME = 'VARNA.jar'